Package: gquad 2.1-2

gquad: Prediction of G Quadruplexes and Other Non-B DNA Motifs

Genomic biology is not limited to the confines of the canonical B-forming DNA duplex, but includes over ten different types of other secondary structures that are collectively termed non-B DNA structures. Of these non-B DNA structures, the G-quadruplexes are highly stable four-stranded structures that are recognized by distinct subsets of nuclear factors. This package provide functions for predicting intramolecular G quadruplexes. In addition, functions for predicting other intramolecular nonB DNA structures are included.

Authors:Hannah O. Ajoge

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gquad.pdf |gquad.html
gquad/json (API)

# Install 'gquad' in R:
install.packages('gquad', repos = c('https://ohuajo.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.00 score 10 scripts 186 downloads 9 exports 12 dependencies

Last updated 2 years agofrom:6466c382c9. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 20 2024
R-4.5-winOKNov 20 2024
R-4.5-linuxOKNov 20 2024
R-4.4-winOKNov 20 2024
R-4.4-macOKNov 20 2024
R-4.3-winOKNov 20 2024
R-4.3-macOKNov 20 2024

Exports:aphasedgquadgquadOhdnahdnaOslippedstrtfozdna

Dependencies:ade4apedigestlatticeMASSnlmepixmapRcppRcppArmadillosegmentedseqinrsp

Manuscript

Rendered fromManuscript.Rnwusingutils::Sweaveon Nov 20 2024.

Last update: 2022-11-29
Started: 2022-11-29